The specifics of the process of the material moisture-heat treatment in the sectional heat exchangers have been analyzed. An operation algorithm of an electronic system for control of energy fluxes in the sectional heat exchangers has been created. An algorithm for modeling the process of moisture-heat treatment of the material in the sectional heat exchangers has been developed. Based on the presented algorithms, a specialized software product in the Visual Studio 2010 environment has been developed. A structure of the electronic system for control of energy fluxes in the sectional heat exchangers has been developed.